5tt2vis¶
Synopsis¶
Generate an image for visualisation purposes from an ACT 5TT segmented anatomical image
Usage¶
5tt2vis [ options ] input output
- input: the input 4D tissue-segmented image
- output: the output 3D image for visualisation
Options¶
- -bg value image intensity of background (default: 0)
- -cgm value image intensity of cortical grey matter (default: 0.5)
- -sgm value image intensity of sub-cortical grey matter (default: 0.75)
- -wm value image intensity of white matter (default: 1)
- -csf value image intensity of CSF (default: 0.15)
- -path value image intensity of pathological tissue (default: 2)
Standard options¶
- -info display information messages.
- -quiet do not display information messages or progress status.
- -debug display debugging messages.
- -force force overwrite of output files. Caution: Using the same file as input and output might cause unexpected behaviour.
- -nthreads number use this number of threads in multi-threaded applications (set to 0 to disable multi-threading)
- -failonwarn terminate program if a warning is produced
- -help display this information page and exit.
- -version display version information and exit.
Author: Robert E. Smith (robert.smith@florey.edu.au)
Copyright: Copyright (c) 2008-2017 the MRtrix3 contributors
This Source Code Form is subject to the terms of the Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed with this file, you can obtain one at http://mozilla.org/MPL/2.0/.
MRtrix is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
For more details, see http://www.mrtrix.org/.