mrstats¶

Synopsis¶

mrstats [ options ]  image

image: the input image from which statistics will be computed.

Description¶

compute images statistics.

Options¶

Statistics options¶

-output field output only the field specified. Multiple such options can be supplied if required. Choices are: mean, median, std, min, max, count. Useful for use in scripts.
-mask image only perform computation within the specified binary mask image.
-histogram file generate histogram of intensities and store in specified text file. Note that the first line of the histogram gives the centre of the bins.
-bins num the number of bins to use to generate the histogram (default = 100).
-dump file dump the voxel intensities to a text file.
-voxel pos only perform computation within the specified voxel, supplied as a comma-separated vector of 3 integer values (multiple voxels can be included).
-position file dump the position of the voxels in the mask to a text file.

Standard options¶

-info display information messages.
-quiet do not display information messages or progress status.
-debug display debugging messages.
-force force overwrite of output files. Caution: Using the same file as input and output might cause unexpected behaviour.
-nthreads number use this number of threads in multi-threaded applications (set to 0 to disable multi-threading)
-failonwarn terminate program if a warning is produced
-help display this information page and exit.
-version display version information and exit.

Author: J-Donald Tournier (jdtournier@gmail.com)

This Source Code Form is subject to the terms of the Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed with this file, You can obtain one at http://mozilla.org/MPL/2.0/

MRtrix is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

For more details, see www.mrtrix.org