mraverageheader

Synopsis

Calculate the average (unbiased) coordinate space of all input images

Usage

mraverageheader [ options ]  input [ input ... ] output
  • input: the input image(s).
  • output: the output image

Options

  • -padding value boundary box padding in voxels. Default: 0
  • -resolution type subsampling of template compared to smallest voxel size in any input image. Valid options are ‘mean’: unbiased but loss of resolution for individual images possible, and ‘max’: smallest voxel size of any input image defines the resolution. Default: mean
  • -fill set the intensity in the first volume of the average space to 1

Data type options

  • -datatype spec specify output image data type. Valid choices are: float32, float32le, float32be, float64, float64le, float64be, int64, uint64, int64le, uint64le, int64be, uint64be, int32, uint32, int32le, uint32le, int32be, uint32be, int16, uint16, int16le, uint16le, int16be, uint16be, cfloat32, cfloat32le, cfloat32be, cfloat64, cfloat64le, cfloat64be, int8, uint8, bit.

Standard options

  • -info display information messages.
  • -quiet do not display information messages or progress status. Alternatively, this can be achieved by setting the MRTRIX_QUIET environment variable to a non-empty string.
  • -debug display debugging messages.
  • -force force overwrite of output files. Caution: Using the same file as input and output might cause unexpected behaviour.
  • -nthreads number use this number of threads in multi-threaded applications (set to 0 to disable multi-threading).
  • -help display this information page and exit.
  • -version display version information and exit.

Author: Maximilian Pietsch (maximilian.pietsch@kcl.ac.uk)

Copyright: Copyright (c) 2008-2018 the MRtrix3 contributors.

This Source Code Form is subject to the terms of the Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed with this file, you can obtain one at http://mozilla.org/MPL/2.0/

MRtrix3 is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

For more details, see http://www.mrtrix.org/