warpcorrect

Synopsis

Replaces voxels in a deformation field that point to 0,0,0 with nan,nan,nan

Usage

warpcorrect [ options ]  in out
  • in: the input warp image.
  • out: the output warp image.

Description

This can be used in conjunction with the warpinit command to compute a MRtrix compatible deformation field from non-linear transformations generated by any other registration package.

Options

Standard options

  • -info display information messages.
  • -quiet do not display information messages or progress status.
  • -debug display debugging messages.
  • -force force overwrite of output files. Caution: Using the same file as input and output might cause unexpected behaviour.
  • -nthreads number use this number of threads in multi-threaded applications (set to 0 to disable multi-threading)
  • -failonwarn terminate program if a warning is produced
  • -help display this information page and exit.
  • -version display version information and exit.

Author: David Raffelt (david.raffelt@florey.edu.au)

Copyright: Copyright (c) 2008-2017 the MRtrix3 contributors.

This Source Code Form is subject to the terms of the Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed with this file, you can obtain one at http://mozilla.org/MPL/2.0/.

MRtrix is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

For more details, see http://www.mrtrix.org/.